Reanalysis of ProteomicsDB Using an Accurate, Sensitive, and Scalable False Discovery Rate Estimation Approach for Protein Groups
Molecular & Cellular Proteomics
2022
21
12
100437
Linking post-translational modifications and protein turnover by site-resolved protein turnover profiling
Nature Communications
2022
13
1
Interpretation of the DOME Recommendations for Machine Learning in Proteomics and Metabolomics
Journal of Proteome Research
2022
21
4
1204-1207
High temporal resolution proteome and phosphoproteome profiling of stem cell-derived hepatocyte development
Cell Reports
2022
38
13
110604
Prosit Transformer: A transformer for Prediction of MS2 Spectrum Intensities
Journal of Proteome Research
2022
21
5
1359-1364
SIMSI-Transfer: Software-assisted reduction of missing values in phosphoproteomic and proteomic isobaric labeling data using tandem mass spectrum clustering
Molecular & Cellular Proteomics
2022
100238
Target deconvolution of HDAC pharmacopoeia reveals MBLAC2 as common off-target
Nature Chemical Biology
2022
Predicting fragment intensities and retention time of iTRAQ‐ and TMTPro‐labeled peptides with Prosit‐TMT
PROTEOMICS
2022
2100257
Prosit-TMT: Deep Learning Boosts Identification of TMT-Labeled Peptides
Analytical Chemistry
2022